Why Should You Make This Recipe? 

This easy recipe is a wonderful addition to my foolproof Almond Flour Desserts collection. If you have under an hour of free time, these paleo almond cinnamon muffins are a delicious and easy way to celebrate the fall season, one muffin at a time!

  • Visually Impressive: These Almond Flour Apple Muffins are picture-perfect treats that will have all your guests fooled as to just how easy they are to make and decorate!
  • Minimally Sweetened: The natural sweetness of the apples and maple syrup means that there is no refined sugar in these healthy apple muffins. 
  • In Season: These delicious muffins are an easy way to bake with the in-season apples you pick this time of year! Seasoned with a hint of cinnamon and that natural apple flavor, this fall treat will warm you up on the inside.
Apple Almond Flour muffins on a plate
  • Quick Clean Up: This recipe only requires one large bowl, one small bowl, and one whisk, so no long and tedious clean up afterwards. Just one more thing that makes this recipe so easy!
  • Paleo, Gluten Free and Dairy-free: These apple muffins are paleo friendly and gluten free, so you can meet many dietary restrictions in group settings with just one simple recipe.

Ingredients:

These Almond Flour Apple Muffins only require 12 simple ingredients, many of which you likely already have in your pantry. 

Ingredients for the recipe are laid out on a marble backdrop

Gather your almond flour, baking powder, baking soda, kosher salt, ground cinnamon, eggs, maple syrup, oil, vanilla extract, apple slices, and chopped walnuts.

Helpful Ingredient Notes including Substitutions:

  • Oil:  I recommend using vegetable oil or melted coconut oil, but don’t use olive oil for this recipe!
  • Almond Flour: This recipe calls for almond flour, although you can use almond meal interchangeably. Almond meal is a bit thicker than almond flour, but either creates a smooth textured muffin. Don’t have access to almond flour? No problem, follow my recipe for a simple DIY almond meal or almond flour at home. 
  • Apples: Any of your favorite juicy apples will work in this recipe. My personal favorites are Gala Apples or Honeycrisp Apples, but if you prefer a more sour apple, Granny Smith Apples or Pink Lady Apples are great alternatives. You can also do a mix and match with different apples to get a balance of sweet, sour and tart!
  • Slicing Apples: When preparing your apples of choice, it is important to slice them very thinly with a mandoline or a knife. Slicing thinly and evenly will ensure that they cook completely and thoroughly. If you are baking for younger children, or just prefer smaller pieces, you can cut your apple slices in half.
  • Maple Syrup: Pure maple syrup and agave nectar can be used interchangeably, depending on your taste preference and availability!

How to Make?

This paleo apple muffin recipe takes just a few steps from start to finish and is completed in just under an hour. Because of how easy these are to prepare, you can make these in advance to enjoy throughout the week, or as a spontaneous treat on the weekend!

How to make gluten free apple muffins step by step photos
  1. Dry Ingredients: Measure out and add your dry ingredients to a mixing bowl and mix together until completely combined. 
  2. Wet Ingredients: Measure out and ddd your wet ingredients to a separate bowl and whisk until completely combined.
  3. Combine: Simply pour your wet ingredients into the dry ingredients and mix together until all the ingredients are fully combined. 
  4. Add Apples: Gently fold in the thinly sliced apple pieces into the muffin batter just until combined. 
Apple muffins in muffin tin showing how to garnish step by step
  1. Pour into Muffin Tins: Divide batter into your prepared muffin pan. Make sure you have 12 equally filled muffin tins with the apple pieces dispersed evenly. 
  2. Decorate: Although this step is optional, it creates for beautifully decorated apple almond muffins. Thinly slice half an apple (again, your choice of apple) and lay three slices on top of each muffin. Each apple slice can slightly overlap to create a fan effect for an additional visual appeal. 
  3. Add chopped walnuts: For an additional texture and nutty flavor, add a small handful of chopped walnuts onto each muffin as well. 
  4. Bake: Bake your muffins at 325 degrees F for 35 minutes, or until the tops of your muffins turn golden brown. Allow your muffins to cool completely, at least 30 minutes in the tin or on a cooling rack, before enjoying!

How To Serve:

  • Enjoy these gluten-free apple muffins with your morning coffee or tea, or serve with my Homemade Almond Milk on any brisk day this fall!
  • If you cannot get enough of apple goodness, try serving it with a few tablespoons of my unsweetened applesauce on the side.

How to Store, Freeze & Thaw

The best part about these paleo apple cinnamon muffins is that they store and freeze well. Simply follow the steps below for delicious apple muffins every time:

  • To Store: This recipe makes 12 apple almond muffins that can be stored in an airtight container for up to 3 days at room temperature, or up to 5 days in the refrigerator. If you keep it in the fridge, warm them in a low-heat (250 degrees F oven) for 5 minutes before serving.
  • To Freeze: You can freeze these muffins for up to one month after making them. Allow the baked muffins to reach room temperature before placing them into the freezer.
  • To Thaw: Once you are ready to enjoy the muffins, remove from the freezer and allow to thaw for 15 minutes before baking at 250 degrees F for 5-8 minutes, or until they are warmed through.
Paleo Apple Cinnamon Muffins on a cooling rack

Expert Tips

  • Slicing Apples: If you own a mandoline, this is a great time to use it to thinly slice your apples. Big apple chunks will not work for this recipe, as they will not bake thoroughly and evenly. If you are looking to purchase a mandoline, I suggest this mandoline. Of course, you can always use a knife to slice your apples.
  • Muffin Tin Liners: I love using parchment paper muffin liners for all of my muffins. If you use parchment paper muffin liners (affiliate link), you do not need to grease your muffin tins. However, if you use regular paper liners, I recommend greasing your tins so that your liners do not stick and result in messy clean up. 
  • Wet Ingredients: I suggest having your wet ingredients at room temperature so that you can develop a velvety smooth muffin batter and evenly baked paleo almond meal muffins. 
  • Do not skip on cooling: While I know that it is hard to wait, do not skip on the cooling process. These almond apple muffins need at least 20-30 minutes to cool for best results.
  • Apples & Maple Syrup: As I mentioned above, you can use your own preference of apples, or a mix of different types of apples like tart apples and sour apples. However, if you are using sweet apples, you can decrease the amount of maple syrup that you use so that your muffins are not overly sweet. Start with using two tablespoons of less maple syrup and go from there.
  • Decoration: The decoration on top is optional, but it is very simple to achieve and beautiful at the end! 
  • Coconut Flour: Do not replace your almond flour with coconut flour, as the batter consistency will be off and it will not work for this recipe.

Similar Gluten Free Muffins You Might Like:

If you enjoyed these apple muffins with almond flour, here are a few other paleo and gluten-free almond flour muffins recipes you might like:

Other Apple Recipes You Might Like:

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Almond Flour Apple Muffins Recipe

4.88 from 41 votes
Yields12 muffins
Prep Time10 minutes
Cook Time35 minutes
Cooling Time20 minutes
Total Time1 hour 5 minutes
These gluten-free and paleo Almond Flour Apple Muffins are perfect for the chilly mornings of autumn to accompany your coffee. Naturally sweetened with maple syrup and apples, they are a healthier alternative to muffins made with granulated sugar.

Ingredients 

Dry Ingredients:

  • 2 cups almond flour , (8.4 oz.)
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon kosher salt
  • ½ teaspoon ground cinnamon

Wet Ingredients:

  • 3 large eggs at room temperature
  • ½ cup +2 tablespoon maple syrup
  • 3 tablespoons coconut oil , melted and cooled (avocado and grapeseed oil would also work)
  • 1 teaspoon vanilla extract

Add Ins and Toppings:

  • 1 apple , Medium sized & Thinly sliced + more as garnish
  • ½ cup walnuts, chopped

Instructions 

  • Preheat oven to 325 degrees F. Line a 12-cup muffin pan with parchment liners.
  • Mix almond flour, baking powder, baking soda, kosher salt, and ground cinnamon in a bowl until no lumps remain.
  • In a separate bowl, whisk together eggs, maple syrup, coconut oil, and vanilla extract on a bowl until emulsified.
  • Pour the wet ingredients into the dry ones and mix until fully combined.
  • Fold in the sliced apples.
  • Divide the batter evenly in the muffin tin.
  • If preferred, top each muffin with 3 slices of apples (like I did in the pictures) and sprinkle them with walnuts.
  • Bake in the oven for 35 minutes or until the top of the muffins turn golden brown.
  • Let it cool for 30 minutes before serving.

Notes

  • Apples: Any of your favorite juicy apples will work in this recipe. My personal favorites are Gala Apples or Honeycrisp Apples, but if you prefer a more sour apple, Granny Smith Apples or Pink Lady Apples are great alternatives. You can also do a mix and match with different apples to get a balance of sweet, sour, and tart.
  • Slicing Apples: If you own a mandoline, this is a great time to use it to thinly slice your apples. Big apple chunks will not work for this recipe, as they will not bake thoroughly and evenly. If you are looking to purchase a mandoline, I suggest this one. Of course, you can always use a knife to slice your apples.
  • Muffin Tin Liners: I love using parchment paper muffin liners for all of my muffins. If you use parchment paper muffin liners, you do not need to grease your muffin tins. However, if you use regular paper liners, I recommend greasing your tins so that your liners do not stick and result in messy clean up. 
  • Wet Ingredients: I suggest having your wet ingredients at room temperature so that you can develop a velvety smooth muffin batter and evenly baked paleo almond meal muffins. 
  • Apples & Maple Syrup: As I mentioned above, you can use your own preference of apples, or a mix of different types of apples like tart apples and sour apples. However, if you are using sweet apples, you can decrease the amount of maple syrup that you use so that your muffins are not overly sweet. Start with using two tablespoons of less maple syrup and go from there.

Nutrition

Calories: 229kcal | Carbohydrates: 16g | Protein: 6g | Fat: 17g | Saturated Fat: 4g | Polyunsaturated Fat: 3g | Monounsaturated Fat: 1g | Trans Fat: 1g | Cholesterol: 41mg | Sodium: 195mg | Potassium: 84mg | Fiber: 3g | Sugar: 10g | Vitamin A: 69IU | Vitamin C: 1mg | Calcium: 86mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: Dessert
Cuisine: American
Tried this recipe?Mention @foolproofliving or tag #foolproofeats!

About Aysegul Sanford

Hello Friend! I'm Aysegul but you can call me “Ice." I’m the cook/recipe-tester/photographer behind this site.

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4.88 from 41 votes (19 ratings without comment)

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65 Comments

  1. These are fantastic, light and so tasty. I used grapeseed oil and I am going to make these on a regular basis as I have Celiac Disease and my grandson is dairy intolerant. Perfect Thankyou. Weighing my flours has also changed my baking for the better 😊

    1. Hi Jacquie,
      We love these apple muffins too. Apples work so well with almond flour 🙂 I hope you try some of the other almond flour recipes we have on the site.
      Thanks for coming by and taking the time to leave a review.
      Cheers,
      Ice

  2. 3 stars
    Please note that some of the comments below are for a different recipe than currently listed. I find it hard to scoop batter with sliced apples into muffin tins. Would be better to chop part of the apples and add to batter and then slice some for the top. Still baking so we’ll see how they turn out but getting them into the tins was a mess because i ended up having to separate out the batter laden slices to make sure each muffin had apples in it.

  3. 5 stars
    This recipe sounds fantastic . Is it possible to use Date syrup instead of Maple syrup ? If yes then how much would the quantity be ?

    1. Hi Jaya,
      To tell you the truth, I have never used date syrup. However, a quick search revealed that it can be used interchangeably with maple syrup.
      I hope this helps. Please let me know if you try it. Meanwhile, I’ll see if I can find some and try it myself.
      Thanks for coming by.

  4. 5 stars
    are the nutrition facts for the whole recipe or just one serving? love this recipe and have made it multiple times now!!! just delicious.

    1. Hi Taylor,
      They are just one serving. I am happy to hear that you like this recipe. It is a favorite in our house too. 🙂

  5. 5 stars
    FABULOUS! The only change I made was to use pears instead of apples simply because I have a pear tree. These were DELISH!!!!!! BTW some people mention the recipe previously used applesauce. I made the recipe that had no applesauce mentioned. I even put the pears and walnuts on top like the picture, so pretty! I just used a knife to slice. The muffins had a lovely texture. I baked at 310 in a convection oven for 32 minutes. PERFECT! I would absolutely make these again!

    1. I love this so much. I will try with pears this weekend. Thanks so much for taking the time to leave a review Leacy.

      1. These muffins look delicious! I’m wondering if grating the apples and folding them into the batter would work rather than thinly slicing? I like the sliced apples as garnish, but feel I would prefer grated apple in the muffin. Your thoughts?

      2. I have not tried that but I think it would still work.
        The only thing I would caution you on is to make sure you do not put the juices of the apples into the muffin batter.
        Hope this helps.

  6. Hello,

    I just returned to this recipe to remake our autumn favourite and it seems you have modified the recipe and lost the applesauce and grated apples and…I don’t remember what else. What a shame as these muffins were so-so juicy and delicious. Could you post the old recipe as a reply to my comments? I am super sad… 🙁

    1. Hi Liis,
      After I received a few emails from some readers saying that they can’t find buckwheat flour I decided to change the recipe. But don’t be sad, I am sharing it below:

      Ingredients:
      * 1 cup rolled oats GF certified – I used Trader Joe’s brand
      * 1 cup almond flour/meal
      * 2/3 cup buckwheat flour *1
      * 2 tablespoons arrowroot powder corn or potato starch would work as well
      * 1 ½ teaspoon baking powder
      * ½ teaspoon baking soda
      * 1 teaspoon ground cinnamon more for sprinkling in the end
      * ½ teaspoon sea salt
      * 10 fresh Medjool dates pitted and chopped
      * 2/3 cup unsweetened fat-free plain yogurt at room temperature
      * 1/3 cup coconut oil melted and cooled
      * 3 large eggs at room temperature
      * 2/3 cup unsweetened applesauce divided *2
      * 3 medium size apples peeled and cored – divided

      Instructions:
      * Pre-heat the oven to 400 degrees. Spray a 12-cup muffin time lightly with oil spray and fill each cup with muffin liners.

      * Place rolled oats in the bowl of a food processor and process until it is fine, 45-50 seconds. Add in the almond flour, buckwheat flour, arrowroot powder, baking powder, baking soda, cinnamon and salt. Pulse 6-7 times to make sure that they are completely mixed. Transfer the dry ingredients into a large mixing bowl. Wipe the bowl of the food processor with a paper towel. Do not wash.

      * Place the dates, yogurt, coconut oil, eggs, and 1/3 cup of the applesauce in the bowl of your food processor. Process until smooth, 40-50 seconds. You may have to stop the food processor and scrape the bottom of the bowl a few times to ensure that the dates are not sticking to each other.

      * Gently fold in the wet ingredients into the dry ingredients.

      * Grate 2 of the apples and fold them (with their juices) into the batter. Slice the third apple thinly and set aside.

      * Drop a heaping tablespoon of the muffin batter into each muffin tin. Divide the rest of the reserved applesauce amongst 12 muffin tins (each should be around 1-teaspoon applesauce). Cover each muffin tin with the rest of the batter.

      * Top each muffin batter with 3 thin slices of apples. Gently press them down.

      * Sprinkle each muffin with a little bit of cinnamon.

      * Bake for 20-22 minutes.

      * Let them cool for at least an hour before serving.


  7. Hello. I have a grain free diet so is it alright to sub buckwheat flakes for the rolled oats? Thanks and greetings from Greece

    1. Hi Michelle,
      I have never tried this recipe with buckwheat flakes. Honestly, I have never tried buckwheat flakes. However, I think its worth a try. Since we already use buckwheat flour in the recipe, I’d say give it a go.
      I hope this helps. Greetings to you from Vermont.
      Cheers!

    1. Yes, you can. Though I would pick one that doesn’t have a strong taste.
      Hope this helps.

  8. 5 stars
    This recipe turned out great, light and fluffy. I was surprised the applesauce in the middle did not cause the muffins to fall apart. It was delicious, I did put walnuts on top also, next time I might just put in batter. Husband thought chocolate chips maybe also. Thank you!

    1. So happy to hear that Gayle. I love the idea of adding chocolate chips too. I need to try that next time.
      Thanks for stopping by. Cheers!